This category includes sites that relate to the details and methods for determining the structure of proteins.
Subcategories 4
Sites 20
- Protein Data Bank PDB provides a text based format for archiving experimentally-determined, three dimensional structures, at the Brookhaven National Laboratory, with list of mirror sites worldwide.
- Structural Classification of Proteins A key for different proteins based on structural features, with keyword search and PDB data, and an entry viewer for download.
- Atlas of Protein Side-Chain Interactions Modeling the packing of all 20 amino acid side-chains with one-another and with DNA - from Birkbeck and University Colleges, London.
- Principles of Protein Structure Archive of online course, with discussion lists, and summary of lecture notes from 1996 at Birkbeck, University of London, UK.
- Protein Structure Initiative Large scale attempt to determine topology, through collaborative internet based effort, maintained by Millennium Information, Inc., Cambridge, MA.
- Histone Sequence Database Compendium of histone protein sequence alignments, including postranslational modifications and proteins containing the histone fold, at the National Human Genome Research Institute, Bethesda, MD.
- Hydrogen Exchange Mass Spectrometry Analysis of proteins and protein dynamics with hydrogen exchange and mass spectrometry from Corrales, NM.
- NetNglyc N-glycosylation site prediction in human proteins using artificial neural networks that examine the sequence context of Asn-Xaa-Ser/Thr sequons, from Center for Biological Sequence Analysis, Technical University of Denmark.
- Peptide Peptidomimetic Informatics Devoted to the modeling of polypeptide structures, aiming to bridge the gap from organic to biochemistry for undergraduates at the University of Pittsburgh, Bradford, PA.
- Chromatin Structure and Function Information regarding histones, histone modifications and their biological roles, and related links.
- Tyrosine Residues in Different Proteins EPR spectrum of a tyrosyl radical provides information about rotational angle of phenoxyl ring. Database compiled to identify the responsible locus, maintained at the University of Essex, Colchester, England.
- NetOGlyc 3.1 Server Produces neural network predictions of mucin type GalNAc O-glycosylation sites in mammalian glycoproteins. Maintained at the Center for Biological Sequence Analysis, Technical University of Denmark.
- Chicken Egg White Lysozyme Enzymatic activity, sequence, crystallization, 3D structure and links to publications on this enzyme.
- BlueTB Molecules Mycobacterium tuberculosis database with information on DNA sequence, map position, structure, and function of proteins. Includes references to a scientific articles.
- NIGMS: The Structures of Life Introduction to structural biology, its relationship to health, disease and developing new medications. Maintained by the National Institute of General Medical Sciences, Bethesda, Maryland.
- Kinase.com A resource on protein kinases, a key class of regulatory proteins. Includes genomic and evolutionary analyses, classification, disease associations and an extensive database of protein kinase genes.
- Protein Kinase Resource Functional and structural information, based on protein sequence, with link to nomenclature for the signaling cascade genes, maintained at the San Diego Supercomputer Center, CA, USA.
- Biozon An attempt to classify all proteins to create a unified biological knowledge resource with emphasis on protein and DNA characterization and classification.
- Protein Structure Prediction Center Advances and archive of meetings on critical assessment of 3D determination from sequence using alignment tools. Maintained at Lawrence Livermore National Laboratory, California.
- Databases Several protein databases including TIMBAL, HOMSTRAD, CREDO, ESST and BIPA including references, maintained by the Department of Biochemistry, University of Cambridge, UK.